Steve, yes, I did solve the problem.... Sold the car!
I've been fighting with this for over 6 months. Initially the back of the car was wet, toyota cleared the rear sunroof drains. helped for a while, but then water reappeared again. I did took out the boot cover struts and installed rubber seals, and sealed everything with silicone (black one, for cars, good for extreme temperatures. Result - dry car again. Then I started to have problems with water in the front - initially in the footwell, but then one day it was coming down the a-pillar - from the top, to the bottom, water coming out from the tweeter speakers... Not even leaking - just running water! Never found where that leak is and how to fix it. Toyota doesn't have a clue. Tried other 2 garages... nothing. SPent two days under the car .. couldn't find it myself.
Just before xmas, opened up the boot, C-pillars are soaking wet again, all upholstery wet took out the boot covers, completely flooded. And the rear light stopped working. I was close from taking a hammer and destroy that b...y thing, but managed to resist and.... traded it for a different (smaller) suv...
So... wasn't a happy chappy overall. Can't believe that 10year old car wasn't even watertight. Problems from 1940's should be completely the thing of the past these days, especially in a premium car brand...