The SE has puddle lights. I never found them that useful because you seem to have to stand next to the vehicle for a second or two before they come on - by which point you have opened the door. They can be disabled/enabled but that is a dealer only option, not via the instrument cluster settings. With the vehicle locked, try standing next to the mirror for a few seconds when dark.
I think you would have footwell lights, again that could be a dealer customisation to turn them off.
I don't believe the over head panel has small LEDs - I certainly don't remember them, unlike my wife's Prius which has one that lights up the drinks holder areas. They are possibly holes for the hands-free microphone or alarm interior sensor or something like that.